PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma68g00830.1
Common NameZOSMA_68G00830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25302.7 Da    PI: 6.1613
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma68g00830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.65e-261058250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     +i+n + rqvtfskRr g++KKAeEL +LCda+v ++ifsstgkl+ey+
  Zosma68g00830.1 10 KIDNATARQVTFSKRRRGLFKKAEELAILCDADVGLVIFSSTGKLFEYA 58
                     69**********************************************8 PP

2K-box45.14.2e-16901701898
            K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      + + a+L+++i +  +++ +l Ge+L+ L+l+eLq Le+ Le++l+++ +kK   ++++i+ lq+k  +l een +Lr++l
  Zosma68g00830.1  90 NSDCARLNRQILETNQKLSQLRGEELKGLTLEELQMLEKTLETGLSRVLQKKGGQIMDEINGLQNKGMQLMEENARLRRQL 170
                      5678999***99999****************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.114161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-37160IPR002100Transcription factor, MADS-box
CDDcd002658.53E-40277No hitNo description
PRINTSPR004049.2E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-31383IPR002100Transcription factor, MADS-box
PfamPF003194.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.22586176IPR002487Transcription factor, K-box
PfamPF014864.6E-1491170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAREKIKIRK IDNATARQVT FSKRRRGLFK KAEELAILCD ADVGLVIFSS TGKLFEYANT  60
SMKEIIERHS NHSKVQRKPE EPSLELHLEN SDCARLNRQI LETNQKLSQL RGEELKGLTL  120
EELQMLEKTL ETGLSRVLQK KGGQIMDEIN GLQNKGMQLM EENARLRRQL LEISTGGNQA  180
ATDPESILYE EGHSSDSITN CVNSITPPEY EDSSDTSLKL GLPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-191103187Myocyte-specific enhancer factor 2B
1tqe_Q6e-191103187Myocyte-specific enhancer factor 2B
1tqe_R6e-191103187Myocyte-specific enhancer factor 2B
1tqe_S6e-191103187Myocyte-specific enhancer factor 2B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926366.11e-108PREDICTED: MADS-box protein JOINTLESS-like
RefseqXP_010926365.11e-108PREDICTED: MADS-box protein JOINTLESS-like
SwissprotQ9FVC12e-91SVP_ARATH; MADS-box protein SVP
TrEMBLA0A0K9NRU51e-164A0A0K9NRU5_Z
STRINGVIT_00s0313g00070.t011e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-82MIKC_MADS family protein